Main Game Trophies:
- A Big Fan of Lefties (Bronze) Acquire all enemy officers’ left arms.
- A Lover, Not a Fighter (Bronze) Successfully complete 10 No Kill battles during story mode.
- A Walk in the Dark (Bronze) Complete the abandoned railroad sequence in File R-03 without using AR Mode.
- Amateur Radio Operator (Gold) Listen to most of the codec conversations.
- Analysis Complete (Bronze) Unlock every VR Mission.
- Anti-Cyborg Sentiment (Bronze) Destroy a total of 100 Cyborgs during story mode.
- Assassin Behind Closed Doors (Bronze) Successfully complete 30 Ninja Kills during story mode.
- Assault with a Deadly Weapon (Bronze) Dismember three enemies during Blade Mode with a single attack.
- Becoming a Lightning God (Gold) Complete story mode on Revengeance difficulty with all S rankings.
- Chosen by History (Silver) Defeat Samuel without taking any damage on Hard difficulty or above.
- Data Mining (Bronze) Acquire all data storage devices.
- Datsu Right (Bronze) Successfully complete 50 Zandatsus during story mode.
- Demilitarized Zone (Bronze) Destroy a total of 100 Heavily Armed Cyborgs during story mode.
- Dwarf Raiden (Bronze) Incapacitate all the soldiers in File R-02 using a Dwarf Gekko.
- Extinction Level Event (Bronze) Destroy a total of 10 Raptors during story mode.
- File R-00: Status – Closed (Bronze) Complete File R-00: Guard Duty.
- File R-01: Status – Closed (Bronze) Complete File R-01: Coup d’État.
- File R-02: Status – Closed (Bronze) Complete File R-02: Research Facility.
- File R-03: Status – Closed (Bronze) Complete File R-03: Mile High.
- File R-04: Status – Closed (Bronze) Complete File R-04: Hostile Takeover.
- File R-05: Status – Closed (Bronze) Complete File R-05: Escape From Denver.
- File R-06: Status – Closed (Bronze) Complete File R-06: Badlands Showdown.
- File R-07: Status – Closed (Bronze) Complete File R-07: Assassination Attempt.
- Genius Destroyer (Silver) Defeat Monsoon without taking any damage on Hard difficulty or above.
- Great Escape (Bronze) Complete File R-05 in less than 7 minutes.
- Herpetophobia (Bronze) Destroy a total of 10 Gekkos during story mode.
- Humanitarian Assistance (Bronze) Rescue all the civilians.
- Ich Liebe Kapitalismus! (Bronze) Acquire all customization items.
- Jumping the Shark (Bronze) Destroy a total of 10 Hammerheads during story mode.
- Looking Out for the Little Guys (Bronze) Destroy a total of 30 Dwarf Gekkos during story mode.
- Love at First Sight (Bronze) While remotely operating a Dwarf Gekko in story mode, find and communicate with all Dwarf Gekkos.
- Menace to Society (Bronze) Cut off the finial at the top of the pagoda in File R-04.
- No Flash Photography! (Bronze) Destroy all the Gun Cameras in File R-01.
- Peekaboo (Bronze) Discover all of the soldiers hidden in cardboard boxes.
- Pond Scum (Bronze) Destroy a total of 5 Vodomjerka during story mode.
- Prodigal Murderer (Silver) Defeat Mistral without taking any damage on Hard difficulty or above.
- Revengeance (Platinum) Obtain all Trophies.
- Rip ‘Em Apart! (Bronze) In story mode, kill 100 enemies by cutting them.
- Silverback (Bronze) Destroy a total of 10 Mastiffs during story mode.
- Slider Strike (Bronze) Destroy a total of 10 Sliders during story mode.
- Steel Tail (Bronze) Cut off Metal Gear RAY’s metal tail during File R-00.
- Surprise Attack! (Bronze) Arrive at the objective in File R-07 without being spotted.
- Tearing Away the Disguise (Bronze) Destroy all of the humanoid Dwarf Gekkos during story mode.
- The Bigger They Are… (Bronze) Destroy a total of 100 Custom Cyborgs during story mode.
- The Politics of Silencing Foes (Silver) Defeat Sen. Armstrong without taking any damage on Hard difficulty or above.
- Truly Human (Silver) Defeat Sundowner without taking any damage on Hard difficulty or above.
- Virtually a God (Gold) Set the highest score on every VR Mission.
- VR Master (Bronze) Complete every VR Mission.
- What Doesn’t Kill You… (Bronze) In story mode, successfully parry 10 attacks in a row in one minute or less.
- Wolf Hunter (Bronze) Destroy a total of 10 Fenrirs during story mode.
- You Don’t Run from Chance (Bronze) Successfully complete 50 Executions during story mode.